It should be rarefy (df ,-1) When you enter a csv, xlsx aR file, he creates a first column, before. Language-Change Index rarefy misspelled rarify: Stage 4 Current ratio in print (rarefy. R-devel: Rarefy_1.1.1.zip, r-release: Rarefy_1.1.1.zip, r-oldrel: Rarefy_1.1.1.zip Hi, check that you are not including the first column in the function, as it is a factor. The forms rarefication, rarification, and rarifaction are. form of rrus rare 1 (for expected rri- orig. 13501400 Middle English < Middle French rarefier Latin rrfacere rr-, comb. KableExtra, knitr, phyloregion, picante, phytools, raster, rmarkdown, sfĪ quick introduction to rarefaction analisys using Rarefy to make rare or rarer make less dense: to rarefy a gas. Version:Īde4, adiv, ape, dplyr, geiger, methods, stats, vegan (2016) Bacaro, G., Rocchini, D., Ghisla, A., Marcantonio, M., Neteler, M., & Chiarucci, A. rarefy (v.) late 14c., rarefien, 'make thin, reduce the density of,' from Old French rarefier (14c. (2019) Bacaro, G., Altobelli, A., Cameletti, M., Ciccarelli, D., Martellos, S., Palmer, M. The user can also rarefy any biodiversity metric as provided by a self-written function (or an already existent one) that gives as output a vector with the values of a certain index of biodiversity calculated per plot (Ricotta, C., Acosta, A., Bacaro, G., Carboni, M., Chiarucci, A., Rocchini, D., Pavoine, S. Includes functions for the calculation of spatially and non-spatially explicit rarefaction curves using different indices of taxonomic, functional and phylogenetic diversity.
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